PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05168g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 293aa    MW: 33770.7 Da    PI: 9.3443
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05168g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.3e-11645544
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               +  r+ tf kR++g+ KK +E  +LC+++ ++i++++++
  Peinf101Scf05168g00003.1  6 KEKARNATFKKRKEGLKKKLHEFTTLCNVNGCMIMYGPKQ 45
                              5567999******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-4158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.732144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-12289IPR002100Transcription factor, MADS-box
PfamPF003193.4E-13545IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MELMSKEKAR NATFKKRKEG LKKKLHEFTT LCNVNGCMIM YGPKQSNGSN SEPEIWTNNS  60
TTSKSSQEEE IQNLIDEYKK SSLVTRSTKT FGLSDYFTDR NKNIEKELIR LRKMNMEKKY  120
PCWLKFMDHF SEFKLRELIS FLDGKVEKVK SRIDFLKGNM NIVDEYYMKA APEGVELSRL  180
TNFSDNVSPL MVQGGSELGG FMNNHYEQAI DPYWQFNGAT SFSGSNNIRG GAPMKYESMF  240
TDNMMCNNQM PYSPYVAPSI QQQSPCMMIP GADLPRRADE RVVKGKLLPY LRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774508.11e-117PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1CBS41e-102M1CBS4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641201e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-12AGAMOUS-like 82